PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06248.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 321aa    MW: 36296.6 Da    PI: 9.0726
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06248.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-073175345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +l+ +a + +  +   +W+++a++++ g+t  +++  + 
       KHN06248.1 31 KWTPAENKLFENALAVYDRDtpdRWHKVAEMIP-GKTVMDVVKQYK 75
                     8*****************99*************.***998887775 PP

2Myb_DNA-binding43.95.6e-14142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r    +Rt+ q+ s+ qky
       KHN06248.1 142 PWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHAQKY 186
                      8*****************************89************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-42376IPR009057Homeodomain-like
PROSITE profilePS512938.382781IPR017884SANT domain
SMARTSM007171.5E-92880IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-113083IPR009057Homeodomain-like
PfamPF002494.4E-63175IPR001005SANT/Myb domain
CDDcd001674.42E-83177No hitNo description
Gene3DG3DSA:1.10.10.601.0E-11134191IPR009057Homeodomain-like
PROSITE profilePS5129420.5135191IPR017930Myb domain
SuperFamilySSF466891.12E-16136190IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17138190IPR006447Myb domain, plants
SMARTSM007171.1E-12139189IPR001005SANT/Myb domain
PfamPF002491.6E-12142186IPR001005SANT/Myb domain
CDDcd001675.53E-11142187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKWEMEILPP ASPYMYNSNW LLDDNRTNNT KWTPAENKLF ENALAVYDRD TPDRWHKVAE  60
MIPGKTVMDV VKQYKELEAD VCDIEAGLIP IPGYSSGTTT TSPFTLDWVN TSPAYDDGFK  120
GITAKRSSSG RPLEQERKKG VPWTEEEHKL FLLGLKKYGK GDWRNISRNY VITRTPTQVA  180
SHAQKYFIRQ LSGGKDKRRA SIHDITTVNL TETTRTSSDE SKRSASPQNS AMLSRHQQLN  240
SNAASSGLNF QWSDQPNAGV AMALNPAHEQ VFMSPYGLNS YGFKMQGQNL HRSSLHESSY  300
LGPQTPNMVF QMQPSQHYSH A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1532961175RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-141AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551300.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-123DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0B2PF840.0A0A0B2PF84_GLYSO; Transcription factor MYB1R1
TrEMBLI1N0150.0I1N015_SOYBN; Uncharacterized protein
STRINGGLYMA18G07250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-88Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]